PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00056088-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 77aa    MW: 8733.68 Da    PI: 5.6595
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00056088-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.37.5e-08750344
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      +WT    +++ +a +++ ++   +W+ +++++  g+++++++ ++
  PSME_00056088-RA  7 SWTSKQNKQFERALALYDKDtpdRWHNVPSMVD-GKSPEEVRKHY 50
                      6********************************.**********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.8E-6456IPR001005SANT/Myb domain
SuperFamilySSF466894.26E-12760IPR009057Homeodomain-like
CDDcd001672.07E-6754No hitNo description
PfamPF002495.3E-6750IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-4758IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 77 aa     Download sequence    Send to blast
MGGQLASWTS KQNKQFERAL ALYDKDTPDR WHNVPSMVDG KSPEEVRKHY EILLEDFNCI  60
EAGQVPYPNY KSSGSSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-328741177RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1134989e-71BT113498.1 Picea glauca clone GQ03411_B22 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011092800.11e-33PREDICTED: transcription factor RADIALIS-like
SwissprotQ58FS39e-33RAD_ANTMA; Transcription factor RADIALIS
TrEMBLD5ADC14e-34D5ADC1_PICSI; Putative uncharacterized protein
STRINGPOPTR_0004s16270.11e-31(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.17e-32RAD-like 1